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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
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Machine learning approach in predicting GlutoPeak test parameters from image data with AutoML and transfer learning
Takehiro Murai, Yoshitaka Inoue, Assey Nambirige, G. Annor. Heliyon, 2023
BiGCN: Leveraging Cell and Gene Similarities for Single-cell Transcriptome Imputation with Bi-Graph Convolutional Networks
Yoshitaka Inoue, Ethan Kulman, Rui Kuang. bioRxiv, 2024
drGT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network
Yoshitaka Inoue, Hunmin Lee, Tianfan Fu, Augustin Luna. arXiv.org, 2024
DrugAgent: Explainable Drug Repurposing Agent with Large Language Model-based Reasoning
Yoshitaka Inoue, Tianci Song, Tianfan Fu. arXiv.org, 2024
DruGagent: Multi-Agent Large Language Model-Based Reasoning for Drug-Target Interaction Prediction
Yoshitaka Inoue, Tianci Song, Xinlin Wang, Augustin Luna, Tianfan Fu. arXiv.org, 2024
Protein-Mamba: Biological Mamba Models for Protein Function Prediction
Bohao Xu, Yingzhou Lu, Yoshitaka Inoue, Namkyeong Lee, Tianfan Fu, Jintai Chen. arXiv.org, 2024
scVGAE: A Novel Approach using ZINB-Based Variational Graph Autoencoder for Single-Cell RNA-Seq Imputation
Yoshitaka Inoue. arXiv.org, 2024
CellMiner cross-database (CellMinerCDB) version 2.2 for explorations of patient-derived cancer cell line pharmacogenomics.
Fathi Elloumi, William C Reinhold, Sudhir Varma, Yanghsin Wang, Meric Kinali, Yasuhiro Arakawa, Yoshitaka Inoue, M. Aladjem, Y. Pommier, Augustin Luna. Nucleic Acids Research, 2025
GraphPINE: Graph Importance propagation for interpretable drug response prediction
Yoshitaka Inoue, Tianfan Fu, Augustin Luna. arXiv.org, 2025
Abstract 3138: CellMiner Cross-Database (CellMinerCDB) for Exploration of Patient-Derived Cancer Cell Line Pharmacogenomics
Fathi Elloumi, William C Reinhold, Sudhir Varma, Yanghsin Wang, Meric Kinali, Yashuhiro Arakawa, Yoshitaka Inoue, M. Aladjem, Y. Pommier, Augustin Luna. Cancer Research, 2026