Machine learning approach in predicting GlutoPeak test parameters from image data with AutoML and transfer learning
Takehiro Murai, Yoshitaka Inoue, Assey Nambirige, G. Annor. Heliyon, 2023
Posts by Collection
portfolio
publications
BiGCN: Leveraging Cell and Gene Similarities for Single-cell Transcriptome Imputation with Bi-Graph Convolutional Networks
Yoshitaka Inoue, Ethan Kulman, Rui Kuang. bioRxiv, 2024
drGT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network
Yoshitaka Inoue, Hunmin Lee, Tianfan Fu, Augustin Luna. arXiv.org, 2024
DrugAgent: Explainable Drug Repurposing Agent with Large Language Model-based Reasoning
Yoshitaka Inoue, Tianci Song, Tianfan Fu. arXiv.org, 2024
DruGagent: Multi-Agent Large Language Model-Based Reasoning for Drug-Target Interaction Prediction
Yoshitaka Inoue, Tianci Song, Xinlin Wang, Augustin Luna, Tianfan Fu. arXiv.org, 2024
Protein-Mamba: Biological Mamba Models for Protein Function Prediction
Bohao Xu, Yingzhou Lu, Yoshitaka Inoue, Namkyeong Lee, Tianfan Fu, Jintai Chen. arXiv.org, 2024
scVGAE: A Novel Approach using ZINB-Based Variational Graph Autoencoder for Single-Cell RNA-Seq Imputation
Yoshitaka Inoue. arXiv.org, 2024
CellMiner cross-database (CellMinerCDB) version 2.2 for explorations of patient-derived cancer cell line pharmacogenomics.
Fathi Elloumi, William C Reinhold, Sudhir Varma, Yanghsin Wang, Meric Kinali, Yasuhiro Arakawa, Yoshitaka Inoue, M. Aladjem, Y. Pommier, Augustin Luna. Nucleic Acids Research, 2025
GraphPINE: Graph Importance propagation for interpretable drug response prediction
Yoshitaka Inoue, Tianfan Fu, Augustin Luna. arXiv.org, 2025
Abstract 3138: CellMiner Cross-Database (CellMinerCDB) for Exploration of Patient-Derived Cancer Cell Line Pharmacogenomics
Fathi Elloumi, William C Reinhold, Sudhir Varma, Yanghsin Wang, Meric Kinali, Yashuhiro Arakawa, Yoshitaka Inoue, M. Aladjem, Y. Pommier, Augustin Luna. Cancer Research, 2026